FreshBooks vs QuickBooks Desktop Enterprise

Side-by-side comparison of features, pricing, and integrations.

Quick Verdict

FreshBooks offers more features (46 vs 37) and more integrations (28 vs 10). Starting price: FreshBooks at $15/mo vs QuickBooks Desktop Enterprise at $19/mo. FreshBooks has 46 unique features while QuickBooks Desktop Enterprise has 37 unique features, with 0 features in common.

FreshBooksQuickBooks Desktop Enterprise
CategoryAccounting SoftwareAccounting Software
Total Features4637
AI-Powered Features41
Starting Price$15/mo$19/mo
Pricing Tiers33
Integrations2810
Shared Features0
Shared Integrations2
Data Quality73%85%

Feature Comparison by Category

Accounting (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Desktop Enterprise Accounting

Administration (0 vs 3)

FeatureFreshBooksQuickBooks Desktop Enterprise
Intercompany Transactions
Multi-company Management
Multiple Users

Analytics (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
AI Invoice Insights

Banking (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Bank Connections

Benefits (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
401(k) Offerings

Billing (15 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Automated Reminders
Automatic Invoice Numbering
Bulk Invoice Actions
Estimate Management
Invoice Payment Tracking
Invoice Reminders
Invoice Scheduling
Invoice Status Tracking
Invoice Templates
Invoice Templates Library
Invoicing
Late Payment Tracking
Multi-Currency Support
Recurring Invoices
Retainer Billing

CRM (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Client Management

Client Management (2 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Client Portal
Customer Portal

Collaboration (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Team Members

Compliance (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Tax Penalty Guarantee

Data Management (2 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Automatic Backup
Data Export
Online Backup and Data Protection

Email (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Email Receipt

Expense Management (6 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Billable Expenses
Expense Automation
Expense Categories
Expense Receipt Scanning
Expense Tracking
Mileage Tracking

Field Service (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Intuit Field Service Management

Infrastructure (0 vs 2)

FeatureFreshBooksQuickBooks Desktop Enterprise
Cloud Hosting
Remote Access

Integration (0 vs 2)

FeatureFreshBooksQuickBooks Desktop Enterprise
Apps & Integrations
E-commerce Integration

Inventory (0 vs 7)

FeatureFreshBooksQuickBooks Desktop Enterprise
Advanced Inventory
Inventory & Order Management
Inventory Expiration Dates
Landed Cost
Mobile Barcode Scanning
Pick, Pack, and Ship
Sales Order Fulfillment

Mobility (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Mobile App

Notifications (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Smart Notifications

Payments (1 vs 3)

FeatureFreshBooksQuickBooks Desktop Enterprise
Automatic Payment Matching
Integrated Payments
Online Payments
QuickBooks Payments

Payroll (0 vs 4)

FeatureFreshBooksQuickBooks Desktop Enterprise
Built-in Payroll
Next-Day Direct Deposit
QuickBooks Desktop Assisted Payroll
QuickBooks Desktop Enhanced Payroll

Pricing (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Advanced Pricing

Project Management (3 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Budget Management
Job Costing
Project Management
Project-Based Budgeting

Reporting (4 vs 3)

FeatureFreshBooksQuickBooks Desktop Enterprise
Advanced Reporting
Consolidated Multi-Company Reporting
Customizable Reports
Financial Reports
Inventory Stock Status by Lot Numbers
Profit & Loss Dashboard
Tax Reports

Sales (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Proposal Creation

Scalability (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Large List Capacity

Security (2 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Role-Based Access Control
Two-Factor Authentication

Specialization (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Industry-Specific Editions

Support (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Priority Circle Support

Time Management (2 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Overtime Tracking
Time Tracking

Time Tracking (0 vs 2)

FeatureFreshBooksQuickBooks Desktop Enterprise
Mobile Time Tracking
QuickBooks Time Elite

Vendor Management (1 vs 0)

FeatureFreshBooksQuickBooks Desktop Enterprise
Vendor Management

Workflow (0 vs 1)

FeatureFreshBooksQuickBooks Desktop Enterprise
Bill and PO Workflow Approvals

Unique Features

Only in FreshBooks (46)

AI Invoice Insights
Bank Connections
Automated Reminders
Automatic Invoice Numbering
Bulk Invoice Actions
Estimate Management
Invoice Payment Tracking
Invoice Reminders
Invoice Scheduling
Invoice Status Tracking
Invoice Templates
Invoice Templates Library
Invoicing
Late Payment Tracking
Multi-Currency Support
Recurring Invoices
Retainer Billing
Client Portal
Customer Portal
Team Members

+ 26 more unique features

Only in QuickBooks Desktop Enterprise (37)

Desktop Enterprise Accounting
Intercompany Transactions
Multi-company Management
Multiple Users
401(k) Offerings
Tax Penalty Guarantee
Online Backup and Data Protection
Intuit Field Service Management
Cloud Hosting
Remote Access
Apps & Integrations
E-commerce Integration
Advanced Inventory
Inventory & Order Management
Inventory Expiration Dates
Landed Cost
Mobile Barcode Scanning
Pick, Pack, and Ship
Sales Order Fulfillment
Automatic Payment Matching

+ 17 more unique features

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